2010 - 2019

2010	2011	2012	2013	2014
2015	2016	2017	2018	2019

2019

Full genome characterization of human G3P[6] and G3P[9] rotavirus strains in Lebanon (Infection, Genetics and Evolution)

One-step pentaplex real-time polymerase chain reaction assay for detection of zika, dengue, chikungunya, West nile viruses and a human housekeeping gene (Journal of Clinical Virology)

Discovery of two highly divergent negative-sense RNA viruses associated witht he parasitic nematode, Capillaria hepatica, in wild Mus musculus from New York City (Journal of General Virology)

Polymicrobial Nature of Tick-Borne Diseases (mBio)

Antibodies to Enteroviruses in Cerebrospinal Fluid of Patients with Acute Flaccid Myelitis (mBio)

Hospital-based zoonotic disease surveillance in Bangladesh: design, field data and difficulties (Philosophical Transactions B)

Viral Diversity of Tick Species Parasitizing Cattle and Dogs in Trinidad and Tobago (Scientific Reports)

Sensitivity and specificity of early screening for autism (BJPsych Open)

Microbiome analysis of Ixodes scapularis ticks from New York and Connecticut (Ticks and Tick-Borne Diseases)

A viral metagenomic survey identifies known and novel mammalian viruses in bats from Saudi Arabia (PLoS One)

A Novel Orthohepadnavirus Identified in a Dead Maxwell's Duiker (Philantomba maxwellii) in Taï National Park, Côte d'Ivoire (Viruses, MDPI)

DEvis: an R package for aggregation and visualization of differential expression data (BMC Bioinformatics, Springer Nature)

Emergency of the East-Central-South-African genotype of Chikungunya virus in Brazil and the city of Rio de Janeiro may have occurred years before surveillance detection (Scientific Reports)

Higher abundance of enterovirus A species in the gut of children with islet autoimmunity (Scientific Reports)

Maternal prenatal Tdap not associated with autism development in the child (The Journal of Pediatrics)

Virome capture sequencing does not identify active viral infection in unicentric and idiopathic multicentric Castleman disease (PLoS ONE)

Maternal fever during pregnancy and offspring attention deficit hyperactivity disorder (Scientific Reports)

Impact of CMV reactivation, treatment approaches and immune reconstitution in a nonmyeloablative tolerance induction protocol in Cynomolgus macaques (Transplantation)

2018

BacCapSeq: a Platform for Diagnosis and Characterization of Bacterial Infections (mBio)

Virome Analysis Reveals No Association of Head and Neck Vascular Anomalies with an Active Viral Infection (In Vivo)

The discovery of Bombali virus adds further support for bats as hosts of ebolaviruses (Nature Microbiology)

Investigation of the Plasma Virome from Cases of Unexplained Febrile Illness in Tanzania from 2013 to 2014: a Comparative Analysis between Unbiased and VirCapSeq-VERT High-Throughput Sequencing Approaches (mBio)

Precision surveillance for viral respiratory pathogens: virome capture sequencing for the detection and genomic characterization of severe acute respiratory infection in Uganda

Insights into myalgic encephalomyelitis/chronic fatigue syndrome phenotypes through comprehensive metabolomics (Scientific Reports)

Waterpipe Smoking as a Public Health Risk: Potential Risk for Transmission of MERS-CoV (Saudi Journal of Biological Sciences)

Gut microbiomes of wild great apes fluctuate seasonally in response to diet (Nature Journal)

Viral diversity of house mice in New York City (mBio)

New York City house mice (Mus musculus) as potential reservoirs for pathogenic bacteria and antimicrobial resistance determinants (mBio)

Diagnosis of Zika Virus Infection by Peptide Array and Enzyme-Linked Immunosorbent Assay (mBio)

Identification of Novel Viruses in Ablyomma Americanus, Dermacentor Variablis and Ixodes Scapularis Ticks (mSphere)

New Parvovirus Associated with Serum Hepatitis in Horses after Inoculation of Common Biological Product (Emerging Infectious Diseases)

A Mulitplex Serologic Platform for Diagnosis of Tick-borne Diseases (Scientific Reports)

Highly Sensitive Virome Capture Sequencing Technique VirCapSeq-VERT Identifies Partial Noncoding Sequences but no Active Viral Infection in Cutaneous T-Cell Lymphoma (J Invest Dermatol.)

2017

Rodent-borne Bartonella Infection Varies According to Host Species Within and Among Cities (EcoHealth)

Parvovirus B19 Infection in Children with Arterial Ischemic Stroke (Stroke)

Prenatal Exposure to Acetaminophen and Risk of ADHD (Pediatrics)

Transcriptional Profiling Confirms the Therapeutic Effects of Mast Cell Stabilization in a Dengue Disease Model (Journal of Virology)

Viral Persistence, Liver Disease and Host Response in Hepatitis C-like Virus Rat Model (Hepatology)

Epidemiological and Serological Investigation into the Role of Gestational Maternal Influenza Virus Infection and Autism Spectrum Disorders (mSphere)

Complete Genome Sequence of T'Ho Virus, a Novel Putative Flavivirus from the Yucatan Peninsula of Mexico (Virology Journal)

Viral Encephalitis of Unknown Cause: Current Perspective and Recent Advances (Viruses)

The Influence of Parental Concern on the Utility of Autism Diagnostic Instruments (Autism Research)

Characterization of Fitzroy River Virus, a Novel Flavivirus in the Yellow Fever Virus Group, with Evidence of Human and Animal Infection (Emerging Infectious Diseases)

Mouse Models of Acute and Chronic Hepacivirus Infection (Science)

Prenatal fever and autism risk (Molecular Psychiatry)

Global patterns in coronavirus diversity (mBio)

Fecal metagenomic profiles in subgroups of patients with myalgic encephalomyelitis/chronic fatigue syndrome (Microbiome)

Central Nervous System Infection with Borna Disease Virus Causes Kynurenine Pathway Dysregulation and Neurotoxic Quinolinic Acid Production (Journal of Virology)

Further Evidence for Bats as the Evolutionary Source of Middle East Respiratory Syndrome Coronavirus (mBio)

Detection of Anaplasma phagocytophilum, Babesia microti, Borrelia burgdorferi, Borrelia miyamotoi, and Powassan Virus in Ticks by a Multiplex Real-Time Reverse Transcription-PCR Assay (mSphere)

Maternal Immunoreactivity to Herpes Simplex Virus 2 and Risk of Autism Spectrum Disorder in Male Offspring (mSphere)

Immune network analysis of cerebrospinal fluid in myalgic encephalomyelitis/chronic fatigue syndrome with atypical and classical presentations (Translational Psychiatry)

Global epidemiology of non-influenza RNA respiratory viruses: data gaps and a growing need for surveillance (Lancet Infectious Diseases)

2016

Analysis of Arbovirus Isolates from Australia Identifies Novel Bunyaviruses Including a Mapputta Group Virus from Western Australia That Links Gan Gan and Maprik Viruses (PLoS One)

Viral Diversity, Prey Preference, and Bartonella Prevalence in Desmodus rotundus in Guatemala (EcoHealth)

Syncytial Hepatitis of Tilapia (Oreochromis niloticus L.) is Associated With Orthomyxovirus-Like Virions in Hepatocytes (Veterinary Pathology)

Characterization of a Novel Orthomyxo-like Virus Causing Mass Die-Offs of Tilapia (mBio)

Merida virus, a putative novel rhabdovirus discovered in Culex and Ochlerotatus spp. mosquitoes in the Yucatan Peninsula of Mexico (Journal of General Virology)

Molecular Survey of Zoonotic Agents in Rodents and Other Small Mammals in Croatia (The American Journal of Tropical Medicine and Hygiene)

A novel hepatovirus identified in wild woodchuck Marmota himalayana (Scientific Reports)

Cytokine network analysis of cerebrospinal fluid in myalgic encephalomyelitis/chronic fatigue syndrome (Molecular Psychiatry)

Evaluation of a multiplex PCR for early diagnosis of ventriculostomy related infections (Journal of Neurosurgery)

Effect of Ex Vivo–Expanded Recipient Regulatory T Cells on Hematopoietic Chimerism and Kidney Allograft Tolerance Across MHC Barriers in Cynomolgus Macaques (Transplantation)

Detection of Tilapia Lake Virus in Clinical Samples by Culturing and Nested Reverse Transcription-PCR (Journal of Clinical Microbiology)

2015

A vision for investigating the microbiology of health and disease (Journal of Infectious Diseases)

Adenovirus and Herpesvirus Diversity in Free-Ranging Great Apes in the Sangha Region of the Republic of Congo (PLOS One)

Characterization of nonprimate hepacivirus and construction of a functional molecular clone (PNAS)

Cytokine network analysis of cerebrospinal fluid in myalgic encephalomyelitis/chronic fatigue syndrome (Molecular Psychiatry)

Detailed Analysis of the African Green Monkey Model of Nipah Virus Disease (PLOS One)

Discovery of a novel nidovirus in cattle with respiratory disease (Journal of General Virology)

Distinct plasma immune signatures in ME/CFS and present early in course of illness (Science Advances)

Evaluation of a multiplex PCR for early diagnosis of ventriculostomy related infections (Journal of Neurosurgery)

Multiplex PCR analysis of clusters of unexplained viral respiratory tract infection in Cambodia (Virology Journal)

Preliminary Survey of Ectoparasites and Associated Pathogens from Norway Rats in New York City (Journal of Medical Entomology)

Virus Hunting (Virology)

Pathosphere.org: pathogen detection and characterization through a web-based, open source informatics platform (BMC Bioinformatics)

Chronic fatigue syndrome/myalgic encephalomyelitis (CFS/ME) is associated with pandemic influenza infection, but not with an adjuvanted pandemic influenza vaccine (Vaccine)

Virome Analysis of Transfusion Recipients Reveals a Novel Human Virus That Shares Genomic Features with Hepaciviruses and Pegiviruses (mBio)

Virome Capture Sequencing Enables Sensitive Viral Diagnosis and Comprehensive Virome Analysis (mBio)

Diagnostics and Discovery in Viral Central Nervous System Infections (Brain Pathology)

Discovery of a Novel Hepatovirus (Phopivirus of Seals) Related to Human Hepatitis A Virus (mBio)

Non-random Patterns in Viral Diversity (mBio)

Fatal Coxsackie meningoencephalitis in a patient with B-cell lymphopenia and hypogammaglobulinemia following rituximab therapy (Annals of Allergy, Asthma & Immunology)

Characterization of the Punta Toro species complex - genus Phlebovirus, family Bunyaviridae (Journal of General Virology)

Genital inflammation and the risk of HIV acquisition in women (Clinical Infectious Diseases)

Middle East Respiratory Syndrome Coronavirus Recombination and the Evolution of Science and Public Health in China (mBio)

Association of Maternal Report of Infant and Toddler Gastrointestinal Symptoms With Autism: Evidence From a Prospective Birth Cohort (JAMA Psychiatry)

Findings from a clinical and laboratory database developed for discovery of pathogenic mechanisms in myalgic encephalomyelitis/chronic fatigue syndrome (Fatigue: Biomedicine, Health Behavior)

2014

Middle East Respiratory Syndrome Coronavirus Quasispecies That Include Homologues of Human Isolates Revealed through Whole-Genome Analysis and Virus Cultured from Dromedary Camels in Saudi Arabia (mBio)

Virome Analysis of Amblyomma americanum, Dermacentor variabilis, and Ixodes scapularis Ticks Reveals Novel Highly Divergent Vertebrate and Invertebrate Viruses (Journal of Virology)

Air Travel Is Associated with Intracontinental Spread of Dengue Virus Serotypes 1–3 in Brazil (PLoS Negl Trop Dis)

Tropospheric winds from northeastern China carry the etiologic agent of Kawasaki disease from its source to Japan (PNAS)

Etiology of severe childhood pneumonia in The Gambia West Africa determined by conventional and molecular microbiological analyses of lung and pleural aspirate samples (Clinical Infectious Diseases)

Identification of a Novel Polyomavirus in a Pancreatic Transplant Recipient With Retinal Blindness and Vasculitic Myopathy (Journal of Infectious Diseases)

Parental Obesity and Risk of Autism Spectrum Disorder (Pediatrics)

Israeli Acute Paralysis Virus: Epidemiology, Pathogenesis and Implications for Honey Bee Health (PLOS Pathogens)

Identification of a novel nidovirus in an outbreak of fatal respiratory disease in ball pythons (Python regius) (Virology Journal)

Investigating a Mystery Disease: Tales from a Viral Detective (Journal of Virology)

Activation of transcription and retrotransposition of a novel retroelement, Steamer, in neoplastic hemocytes of the mollusk Mya arenaria (PNAS)

Andes Hantavirus Variant in Rodents, Southern Amazon Basin, Peru (Emerging Infectious Diseases)

Detection of Zoonotic Pathogens and Characterization of Novel Viruses Carried by Commensal Rattus norvegicus in New York City (mBio)

Long-term storage of blood RNA collected in RNA stabilizing Tempus tubes in a large biobank – evaluation of RNA quality and stability (BMC Research Notes)

The Autism Birth Cohort (ABC): a study of autism spectrum disorders in MoBa (Norsk Epidemiologi)

West Nile Virus in the British Virgin Islands (EcoHealth)

Characterization of the Sandfly fever Naples species complex and description of a new Karimabad species complex (genus Phlebovirus, family Bunyaviridae), (Journal of General Virology)

Genome characterization of Long Island tick rhabdovirus, a new virus identified in Amblyomma americanum ticks (Virology Journal)

Middle East Respiratory Syndrome Coronavirus Infection in Dromedary Camels in Saudi Arabia (mBio)

Upolu virus and Aransas Bay virus, two presumptive bunyaviruses, are novel members of 2 the family Orthomyxoviridae (Journal of Virology)

Genomic and phylogenetic characterization of viruses included in the Manzanilla 2 and Oropouche species complexes of the genus Orthobunyavirus, family Bunyaviridae (Journal of General Virology)

Novel coronavirus and astrovirus in delaware bay shorebirds (PLoS ONE)

Identifying Children with Autism Spectrum Disorder at 18 Months in a General Population Sample (Paediatric Perinatal Epidemiology)

2013

A Prospective Study of Agents Associated with Acute Respiratory Infection among Young American Indian Children (Pediatr Infect Dis J)

Evaluation of a Pilot Respiratory Virus Surveillance System Linking Electronic Health Record and Diagnostic Data (Journal of Public Health Management and Practice)

The X proteins of bornaviruses interfere with type I interferon signalling (Journal of General Virology)

A novel mosquito-borne orbivirus species found in Southeast Asia (Journal of General Virology)

Characterization of Salehabad virus species complex of the genus Phlebovirus (Bunyaviridae) (Journal of Genera Virology)

Genomic analysis of two novel human enterovirus c genotypes found in respiratory samples from Peru (Journal of General Virology)

Viral surveillance and discovery (Current Opinion in Virology)

Host-rabies virus protein-protein interactions as druggable antiviral targets (PNAS)

Identification of a pegivirus (GB virus-like virus) that infects horses (Journal of Virology)

Serotype analysis of streptococcus pneumoniae in lung and nasopharyngeal aspirates from children in the Gambia by MassTag PCR (Journal of Clinical Microbiology)

Negevirus: a proposed new taxon of insect-specific viruses with wide geographic distribution (Journal of Virology)

The changing face of pathogen discovery and surveillance (Nature Reviews Microbiology)

Emerging viruses (Current Opinion in Virology)

Early Growth Patterns in Children with Autism (Epidemiology)

Characterization of Farmington virus, a novel virus from birds that is distantly related to members of the family Rhabdoviridae (Virology Journal)

Genomic analysis of coxsackieviruses A1, A19, A22, enteroviruses 113 and 104: viruses representing two clades with distinct tropism within enterovirus C (Journal of General Virology

Identification of a Novel Cetacean Polyomavirus from a Common Dolphin (Delphinus delphis) with Tracheobronchitis

Use of staged molecular analysis to determine causes of unexplained central nervous system infections (Emerging Infectious Diseases)

The genomics of emerging pathogens (Annu Rev Genomics Hum Genet)

Interpregnancy interval and risk of autistic disorder (Epidemiology)

Discovery of a unique novel clade of mosquito-associated bunyaviruses (Journal of Virology)

A Strategy To Estimate Unknown Viral Diversity in Mammals (mBio)

Centroid based clustering of high throughput sequencing reads based on n-mer counts (BioMed Central)

Characterization of the uukuniemi virus group (phlebovirus: bunyaviridae): evidence for seven distinct species. (JVI)

Middle East Respiratory Syndrome coronavirus in bats, Saudi Arabia (Emerging Infectious Diseases)

Analysis of Self-selection Bias in a Population-based Cohort Study of Autism Spectrum Disorders (Paediatric and Perinatal Epidemiology)

Immune-mediated animal models of Tourette syndrome. (Neuroscience and biobehavioral reviews)

Association between maternal use of folic acid supplements and risk of autism spectrum disorders in children. (JAMA)

Ebola virus antibodies in fruit bats, bangladesh. (Emerging infectious diseases)

Identification of Rodent Homologs of Hepatitis C Virus and Pegiviruses (mBio)

Bats are a major natural reservoir for hepaciviruses and pegiviruses (PNAS)

Pandemic H1N1 Influenza Isolated from Free-Ranging Northern Elephant Seals in 2010 off the Central California Coast (PLOS ONE)

Coronaviruses in bats from Mexico (Journal of General Virology)

2012

Identification of a Highly Transmissible Animal-Independent Staphylococcus aureus ST398 Clone with Distinct Genomic and Cell Adhesion Properties (MBio)

A Novel Herpesvirus in 3 Species of Pheasants: Mountain Peacock Pheasant (Polyplectron inopinatum), Malayan Peacock Pheasant (Polyplectron malacense), and Congo Peafowl (Afropavo congensis)

Absence of evidence for bornavirus infection in schizophrenia, bipolar disorder and major depressive disorder (Mol Psychiatry)

Editorial for Absence of evidence for bornavirus infection in schizophrenia, bipolar disorder and major depressive disorder (Mol Psychiatry)

Application of Novel PCR-Based Methods for Detection, Quantitation, and Phylogenetic Characterization of Sutterella Species in Intestinal Biopsy Samples from Children with Autism and Gastrointestinal Disturbances (MBio)

Zoonotic Viruses Associated with Illegally Imported Wildlife Products (PLoS One)

Genetic characterization of the Wyeomyia group of orthobunyaviruses and their phylogenetic relationships (J Gen Virology)

Serology-Enabled Discovery of Genetically Diverse Hepaciviruses in a New Host (J Virology)

Lymphocytic Choriomeningitis Virus–associated Meningitis, Southern Spain (Emerg Infect Dis)

Complete Genome Sequence of the First Canine Circovirus (J Virology)

Emergence of Fatal Avian Influenza in New England Harbor Seals (MBio)

Eilat virus, a unique alphavirus with host range restricted to insects by RNA replication (PNAS)

CII Press Release for CFS/ME/XMRV/pMLV study

Prenatal and Postnatal Epigenetic Programming: Implications for GI, Immune, and Neuronal Function in Autism (Autism Res Treat)

Worldwide emergence of multiple clades of enterovirus 68 (J Gen Virology)

A Multicenter Blinded Analysis Indicates No Association between Chronic Fatigue Syndrome/Myalgic Encephalomyelitis and either Xenotropic Murine Leukemia Virus-Related Virus or Polytropic Murine Leukemia Virus (mBio)

Genomic and antigenic characterization of Jos virus

Biocontainment in Gain-of-Function Infectious Disease Research (MBio)

Human blood RNA stabilzation in samples collected and transported for a large biobank (BMC Research Notes)

Diversity and Distribution of Hantaviruses in South America (J Virology)

Genome-scale phylogeny of the alphavirus genus suggests a marine origin.

Prediction and prevention of the next pandemic zoonosis (Lancet)

Characterization of novel canine bocaviruses and their association with respiratory disease (Journal of General Virology)

Genomic and phylogenetic characterization of Brazilian yellow fever virus strains (Journal of Virology)

2011

The search for meaning in virus discovery

A rapid molecular strategy for orbivirus detection and characterization

Aguacate virus, a new antigenic complex of the genus Phlebovirus (family Bunyaviridae)

An insect nidovirus emerging from a primary tropical rainforest

Bocavirus episome in infected human tissue contains non-identical termini

Borna Disease Virus - Fact and Fantasy

Bornaviruses

Broadly cross-reactive antibodies dominate the human B cell response against 2009 pandemic H1N1 influenza virus infection

Characterization of a canine homolog of hepatitis C virus

Characterization of a canine homolog of human aichivirus

Characterization of the Candiru antigenic complex (Bunyaviridae-Phlebovirus), a highly diverse and reassorting group of viruses affecting humans in tropical America

Discovery of an Ebolavirus-Like Filovirus in Europe

Discovery of an orthoreovirus in the aborted fetus of a Stellar sea lion (Eumetopias jubatus)

Evaluation of two molecular methods for the detection of Yellow fever virus genome

First report of sylvatic DENV-2 associated dengue hemorrhagic fever in West Africa

Genetic characterization of K13965 - a strain of Oak Vale virus from Western Australia

Genomic and phylogenetic characterization of Leanyer virus, a novel orthobunyavirus isolated in northern Australia

Human metapneumovirus infection in wild mountain gorillas, Rwanda

Impaired carbohydrate digestion and transport and mucosal dysbiosis in the intestines of children with autism and gastrointestinal disturbances

Lack of evidence for an association between Iridovirus and colony collapse disorder

Longitudinal molecular microbial analysis of influenza-like illness in New York City, May 2009 through May 2010

Novel Picorna virus in turkey poults with hepatitis, California, USA

Rapid molecular strategy for orbivirus detection and characterization

Serological studies confirm the novel astrovirus HMOAstV-C as a highly prevalent human infectious agent

Toll-like Receptor 3 Regulates Neural Stem Cell Proliferation by Modulating the Sonic Hedgehog Pathway

2010

Astrovirus Encephalitis in boy with X-linked agammaglobulinemia

Broadly cross-reactive antibodies dominate the acute B cell response against pandemic 2009 H1N1 influenza virus infection in humans

Characterization of Durham virus, a novel rhabdovirus that encodes both a C and SH protein

Circulation of mumps virus genotypes in Spain from 1996 to 2007

Discovery and characterization of mammalian endogenous parvoviruses

Epidemiologic Investigation of immune-mediated polyradiculoneuropathy among abattoir workers exposed to porcine brain

First report of sudden death due to myocarditis caused by adenovirus serotype 3

Genomic and phylogenetic characterization of Merino Walk virus, a novel arenavirus isolated in South Africa

Granada virus: a natural phlebovirus reassortant of the Sandfly fever Naples serocomplex with low seroprevalence in humans.pdf

Heart and Skeletal Muscle Inflammation of Farmed Salmon Is Associated with Infection with a Novel Reovirus

High diversity and ancient common ancestry of lymphocytic choriomeningitis virus

Host dependent evolutionary patterns and the origin of 2009 H1N1 pandemic influenza

Identification and Characterization of a New Bocavirus Species in Gorillas

Identification of GBV-D, a novel GB-like flavivirus from old world frugivorous bats (Pteropus giganteus) in Bangladesh

Identification of a Severe Acute Respiratory Syndrome Coronavirus-like Virus in a Leaf-Nosed Bat in Nigeria

Induction of toll-like receptor 3-mediated immunity inhibits cortical neurogenesis and causes behavioral disturbances

Integrated Capillary Electrophoresis Microsystem for Multiplex Analysis of Human Respiratory Viruses

Microbe Hunting

Molecular characterization of severe and mild cases of Influenza A (H1N1) 2009 strain from Argentina

Nipah virus outbreak with person-to-person transmission in Thakurgaon, Bangladesh 2007

Nonparametric methods for the analysis of single-color pathogen microarrays

Passive transfer of streptococcus-induced antibodies reproduces behavioral disturbances in a mouse model of pediatric autoimmune neuropsychiatric disorders associated with streptococcal infection

Proposal for a revised taxonomy of the family Filoviridae: classification, names of taxa and viruses, and virus abbreviations

Proventricular dilatation disease associated with Avian bornavirus in a scarlet macaw (Ara macao)

RNA viruses in Hymenopteran pollinators: evidence of inter-taxa virus transmission via pollen and potential impact on non-Apis Hymenopteran species

The Autism Birth Cohort: a paradigm for gene-environment-timing research

The diagnosis of proventricular dilation disease: Use of a western blot assay to detect antibodies against avian borna virus

Use of avian bornavirus isolates to induce proventricular dilation disease in conures

Use of nucleotide composition analysis to infer hosts for three novel picorna-like viruses

Z proteins of new world arenaviruses bind RIG-I and interfere with type I interferon induction